RUFAS.routines.animal.animal_typed_dicts module#

class RUFAS.routines.animal.animal_typed_dicts.HerdInfoTypedDict#

Bases: TypedDict

List of expected keys for herd information dictionary

calf_num: int#

heiferI_num: int#

heiferII_num: int#

heiferIII_num_springers: int#

cow_num: int#

replace_num: int#

herd_num: int#

breed: str#

class RUFAS.routines.animal.animal_typed_dicts.PenTypedDict#

Bases: TypedDict

List of expected keys for pen information dictionary

id: int#

animal_combination: str#

vertical_dist_to_milking_parlor: float#

horizontal_dist_to_milking_parlor: float#

number_of_stalls: float#

housing_type: str#

bedding_type: str#

pen_type: str#

manure_handling: str#

manure_separator: str#

manure_storage: str#

max_stocking_density: float#

ration: Dict[str, float | str]#

ration_per_animal: Dict[str, float | str]#

animals_in_pen: Dict[str, Any]#

class RUFAS.routines.animal.animal_typed_dicts.AnimalBaseInitArgsTypedDict#

Bases: TypedDict

List of expected keys for animal base initialization arguments dictionary id: int

The ID of the animal.

breed: str: The breed of the animal.
birth_date: str: The birthdate of the animal.
days_born: int: The age of the animal, days.
birth_weight: float: The birth weight of the animal, kg.
p_init: int: The initial phosphorus amount, kg.
body_weight_history: NotRequired[List]: The body weight history of the animal.
pen_history: NotRequired[List]: The pen history of the animal.
conceptus_weight: NotRequired[float]: The conceptus weight of the animal, kg.
calf_birth_weight: NotRequired[float]: The birth weight of the calf, kg.
net_merit: float: The net merit value that represents the genetic value of the animal, $USD.

id: int#

breed: str#

birth_date: str#

days_born: int#

birth_weight: float#

p_init: int#

body_weight_history: NotRequired[List]#

pen_history: NotRequired[List]#

conceptus_weight: NotRequired[float]#

calf_birth_weight: NotRequired[float]#

net_merit: NotRequired[float]#

class RUFAS.routines.animal.animal_typed_dicts.CalfValuesTypedDict#

Bases: TypedDict

List of expected keys for calf values dictionary

id: int#

breed: str#

birth_date: int#

days_born: int#

birth_weight: float#

p_init: int#

body_weight: float#

wean_weight: float#

mature_body_weight: float#

events: str#

class RUFAS.routines.animal.animal_typed_dicts.HeiferIValuesTypedDict#

Bases: TypedDict

List of expected keys for heifer I values dictionary

id: int#

breed: str#

birth_date: int#

days_born: int#

birth_weight: float#

body_weight: float#

wean_weight: float#

mature_body_weight: float#

events: str#

class RUFAS.routines.animal.animal_typed_dicts.HeiferIIValuesTypedDict#

Bases: TypedDict

id: int#

breed: str#

birth_date: int#

days_born: int#

birth_weight: float#

body_weight: float#

wean_weight: float#

mature_body_weight: float#

events: str#

repro_program: str#

tai_method_h: str#

synch_ed_method_h: str#

estrus_count: int#

estrus_day: int#

tai_program_start_day_h: int#

synch_ed_program_start_day_h: int#

synch_ed_estrus_day: int#

synch_ed_stop_day: int#

conception_rate: float#

ai_day: int#

abortion_day: int#

days_in_preg: int#

gestation_length: int#

p_gest_for_calf: float#

calf_birth_weight: float#

class RUFAS.routines.animal.animal_typed_dicts.AnimalConfigTypedDict#

Bases: TypedDict

Keeps track of all the attributes stored in the animal config object used in animal_manager.py.

This list of attributes should also match the attributes provided by the animal_management_animal.json. To make it easier to access the attributes, the animal config object in the AnimalManager class has been flattened out compared to the structure of the JSON object.

breeding_start_day_h: int#

heifer_repro_cull_time: int#

heifer_repro_method: str#

cow_repro_method: str#

semen_type: str#

days_in_preg_when_dry: int#

lactation_curve: str#

repro_cull_time: int#

do_not_breed_time: int#

cull_milk_production: int#

cow_times_milked_per_day: int#

male_calf_rate_sexed_semen: float#

male_calf_rate_conventional_semen: float#

keep_female_calf_rate: float#

wean_day: int#

wean_length: int#

milk_type: str#

estrus_detection_rate: float#

estrus_insemination_rate: float#

estrus_conception_rate: float#

heifer_user_defined_tai_cr: float#

cow_presynch_protocol: str#

cow_TAI_protocol: str#

ovsynch56_conception_rate: float#

ovsynch48_conception_rate: float#

cosynch72_conception_rate: float#

cosynch5d_conception_rate: float#

cow_user_defined_tai_cr: float#

cow_resynch_protocol: str#

user_define_tai_length: int#

tai_program_start_day: int#

voluntary_waiting_period: int#

conception_rate_decrease: float#

prefresh_day: int#

calving_interval: int#

use_input_calving_interval: bool#

birth_weight_avg_ho: float#

birth_weight_std_ho: float#

birth_weight_avg_je: float#

birth_weight_std_je: float#

target_heifer_preg_day: int#

mature_body_weight_avg: float#

mature_body_weight_std: float#

avg_estrus_cycle_heifer: float#

std_estrus_cycle_heifer: float#

avg_gestation_len: float#

std_gestation_len: float#

preg_check_day_1: int#

preg_loss_rate_1: float#

preg_check_day_2: int#

preg_loss_rate_2: float#

preg_check_day_3: int#

preg_loss_rate_3: float#

avg_estrus_cycle_return: float#

std_estrus_cycle_return: float#

avg_estrus_cycle_cow: float#

std_estrus_cycle_cow: float#

avg_estrus_cycle_after_pgf: float#

std_estrus_cycle_after_pgf: float#

wood_l: List[List[float]]#

wood_m: List[List[float]]#

wood_n: List[List[float]]#

wood_l_std: List[List[float]]#

wood_m_std: List[List[float]]#

wood_n_std: List[List[float]]#

parity_death_prob: List[float]#

death_day_prob: List[float]#

parity_cull_prob: List[float]#

mastitis_cull_prob: List[float]#

feet_leg_cull_prob: List[float]#

injury_cull_prob: List[float]#

disease_cull_prob: List[float]#

udder_cull_prob: List[float]#

unknown_cull_prob: List[float]#

cull_day_count: List[int]#

still_birth_rate: float#

class RUFAS.routines.animal.animal_typed_dicts.InitialHerdSummaryTypedDict#

Bases: TypedDict

num_calf: int#

num_heiferI: int#

num_heiferII: int#

num_heiferIII: int#

num_cow: int#

num_replacement: int#

avg_calf_age: float#

avg_heiferI_age: float#

avg_heiferII_age: float#

avg_heiferIII_age: float#

avg_cow_age: float#

avg_replacement_age: float#

cow_avg_days_in_preg: float#

cow_avg_days_in_milk: float#

cow_avg_parity: float#

cow_avg_CI: float#

class RUFAS.routines.animal.animal_typed_dicts.AvailableFeedsTypedDict#

Bases: TypedDict

feed_id: List[int]#

feed_key: List[str]#

price: List[float]#

TDN: List[float]#

EE: List[float]#

DE: List[float]#

is_fat: List[bool]#

calcium: List[float]#

phosphorus: List[float]#

NDF: List[float]#

feed_type: List[str]#

is_wetforage: List[bool]#

Kd: List[float]#

N_A: List[float]#

N_B: List[float]#

CP: List[float]#

dRUP: List[float]#

lactating_cow_minimum: List[float]#

lactating_cow_limit: List[float]#

dry_cow_minimum: List[float]#

dry_cow_limit: List[float]#

heiferIII_limit: List[float]#

heiferII_limit: List[float]#

heiferI_limit: List[float]#

calf_limit: List[float]#

class RUFAS.routines.animal.animal_typed_dicts.FeedInfoTypedDict#

Bases: TypedDict

feed_type: str#

is_fat: bool#

calcium: float#

EE: float#

DE: float#

DE_Base: float#

de_key: float#

phosphorus: float#

NDF: float#

class RUFAS.routines.animal.animal_typed_dicts.SoldAnimalTypedDict#

Bases: TypedDict

id: int#

animal_type: str#

sold_at_day: int#

body_weight: float#

cull_reason: str | None#

days_in_milk: int | str#

parity: int | str#