RUFAS.biophysical.animal.animal_health.disease module

class RUFAS.biophysical.animal.animal_health.disease.Disease

Bases: ABC

Class representing disease simulation.

__init__() → None

abstractmethod assess_disease_risk(time: RufasTime, animal_health_status: AnimalHealthStatus) → bool

Base function for disease risk determination.

Parameters

timeRufasTime

The point in time in the simulation.

animal_health_statusAnimalHealthStatus

The health status of the animal.

abstractmethod calculate_incidence_rate() → float

abstractmethod will_develop_disease(incidence_rate: float) → bool

Takes in incidence rate and compares it to RNG to deterine if animal will develop disease.

Parameters

incidence_ratefloat

The incidence rate of the disease.

Returns

bool

Whether the animal will develop the disease.

abstractmethod determine_at_risk_period(animal_health_status: AnimalHealthStatus) → int

Probability mass function to get the risk period.

abstractmethod immediate_effect() → None

abstractmethod intermediate_effect() → None

abstractmethod lasting_effect() → None

_abc_impl = <_abc._abc_data object>